Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015916333.1_cds_XP_016466041.1_58937
CDS Infomation

[gene=LOC107788827] [db_xref=GeneID:107788827] [protein=threonine--tRNA ligase, chloroplastic/mitochondrial 2-like] [protein_id=XP_016466041.1] [location=complement(join(8938..9183,9322..9630,11366..11743,11916..12169,13750..13897,14036..14182,15067..15402))] [gbkey=CDS]
Sequence

ATGAAGTGCGTAGGCGCTCTAGGCAAAACAATGGCTTTATCACTATCTTCACGCCCTTCT
CTCTTCACTTCCTCTATAAGAAACACCTTTTATAGCTTCCCTATTCGTCAATTTAGCACT
AGTCTTTTTGTTCTTTACCCATCCAAGAACTGTAGTAGCACTAGGAACAAGTTGCTGAGA
TGTCACAGCAATTCTTTCTCGACCCATGCCGTCGCCACCGATTCTTCTGAAGCTCCTGCT
GCCGCCGATGAACGGACAAATGGTGATGCCCCAGTTGAGAAAATTGTTCTTCCCACTAAC
GAATCGTCTGACACGCTCCTTAGAGTTCGCCACACGTGTGCTCATGTTATGGCCATGGCA
GTCCAAAAGCTTTACCCAAATGCAAAAGTGACAATTGGGCCCTGGATTGAAAATGGTTTT
TATTATGATTTTGATATGGAGCCATTGACTGACAGAGACTTGAAGAGGATTAAGAAGGAA
ATGGATCGAATTATCAGCCGAAATTTGCCTCTTGTTAGAGAAGAAGTTAGTCGGGACGAA
GCTCAGAGAAGAATAATGGCTATCAATGAACCTTACAAGGTAGAGATTTTAGAGAGCATA
AAGGAGGAACCGATTACCATATATCATATTGGTAATGAATGGTGGGATCTTTGTGCGGGA
CCTCATGTTGAAACTACAGGAAAGATTAACAAAAAAGCTGTTGAGCTTGAATCTGTTGCT
GGTGCTTACTGGAGAGGAGATGTAAAAAAACCAATGCTACAAAGGATTTATGGCACCGCA
TGGGAGAACGAGGACCAATTAAAAGCGTATCTTCACTTCAAAGAAGAAGCTAAACGGCGT
GATCACCGGAGACTTGGCCAAGATCTTGATCTCTTCTCCATTCAGGATGAAGCTGGTGGA
GGCTTAGTGTTCTGGCATCCCAAAGGAGCTATTATTAGGCACATAATAGAAGACACTTGG
AAAAAGATTCATATGGAGAGGGGCTATGATTTGCTCTATACTCCCCATGTAGCTAAGGCA
GATCTTTGGAAGATTAGCGGTCATCTGGACTTCTACAAAGAGAATATGTTTGATCAGATG
GAGATTGAGGAAGAGCTTTATCAGCTTCGGCCAATGAACTGCCCTTATCATGTATTGGTC
TATAAGAGGCACTTACACTCTTATCGGGATTTTCCAATCAGAGTTGCAGAGCTTGGAACA
GTGTATAGATATGAGTTATCTGGAAGCTTACATGGCCTTTTCCGTGTAAGAGGTTTTACC
CAGGATGATGCACACATCTTCTGTTTAGAGGATCGAATTAAAGATGAAATCAGGGGTGTG
TTAGACCTGACCGAGGAAATATTACAGCAATTTGGTTTTGACAAGTACGAGGTGAACCTT
TCAACAAGGCCAGAAAAGGCTGTGGGAGATGATGAGATTTGGGAAAAAGCAACATCCGCA
CTTAAGGATGCTTTAGAAGACAAAGGTTGGAGCTATCAGATAGATGATGGTGGTGGGGCA
TTCTATGGTCCCAAGATTGATCTGAAAATTGAGGATGCTCTCGGAAGGAAGTGGCAATGC
TCAACTATACAGGTTGATTTCAATTTACCCCAGCGCTTTGACATTACATATGTTGACTCA
AATCAAGAAAGGAAGCGGCCTATCATGATCCATAGAGCAGTTCTTGGATCTTTGGAGCGC
TTTTTTGGTGTTCTCATAGAGAATTATGCTGGTGATTTTCCGCTTTGGCTTTCTCCCATC
CAAGCTCGAGTTTTACCCGTTACTGATGCTCAGGTAATCAATACTCGTTTGACTTATTCT
TGTTTTCCCTTTACATAA

Peptide Sequence

PEP ID

XP_016466041.1
PEP Infomation

PREDICTED: threonine--tRNA ligase, chloroplastic/mitochondrial 2-like [Nicotiana tabacum]
Sequence

MKCVGALGKTMALSLSSRPSLFTSSIRNTFYSFPIRQFSTSLFVLYPSKNCSSTRNKLLR
CHSNSFSTHAVATDSSEAPAAADERTNGDAPVEKIVLPTNESSDTLLRVRHTCAHVMAMA
VQKLYPNAKVTIGPWIENGFYYDFDMEPLTDRDLKRIKKEMDRIISRNLPLVREEVSRDE
AQRRIMAINEPYKVEILESIKEEPITIYHIGNEWWDLCAGPHVETTGKINKKAVELESVA
GAYWRGDVKKPMLQRIYGTAWENEDQLKAYLHFKEEAKRRDHRRLGQDLDLFSIQDEAGG
GLVFWHPKGAIIRHIIEDTWKKIHMERGYDLLYTPHVAKADLWKISGHLDFYKENMFDQM
EIEEELYQLRPMNCPYHVLVYKRHLHSYRDFPIRVAELGTVYRYELSGSLHGLFRVRGFT
QDDAHIFCLEDRIKDEIRGVLDLTEEILQQFGFDKYEVNLSTRPEKAVGDDEIWEKATSA
LKDALEDKGWSYQIDDGGGAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDITYVDS
NQERKRPIMIHRAVLGSLERFFGVLIENYAGDFPLWLSPIQARVLPVTDAQVINTRLTYS
CFPFT

Transcript Sequence

Gene sequence data has not been registered.